ClowdControl

101

Integrating Quality Control


and Pipeline Deployment


in the Cloud

Gregory Kiar, Lee Tirrell, Amanda Easson, Andrew Doyle,
Chris Gorgolewski, Anisha Keshavan

Outline

  • our background
  • our pieces
  • our sum
  • our plan

our background

  • we have access to incredible datasets
  • a myriad of automatic and interactive tools
  • access to the scalable clouds for computation

  • ... we want to increase ease of access for scientists

then 4 projects became 1

our pieces

MindControl

ABIDE

abide

FreeSurfer

Deep-QC

cnn

Clowder

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our sum

we integrated web-based QC with automated deployment of pipelines to the cloud.

cnn

demo

one line to run it all


docker run -ti --rm -v ${PWD}/.mindcontrol/:/home/mindcontrol/mindcontrol/.meteor/local -v ${PWD}/credentials.csv:/home/mindcontrol/credentials.csv -v ${PWD}/credentials:/home/mindcontrol/.aws/credentials -v ${BIDS_DIR}:/bids -p 3000:3000 -p 8080:8080 clowdcontrol/mindcontrol:v${version}

our plan

  • we will generalize our tool further towards being agnostic to *
  • we will submit an Abstract to Frontiers in Neuroinformatics Collaborative special issue
cnn

... and more pretty pictures like this

for more info...

... check out our evolving Open HackPad.

Thank you!!!

Acknowledgements

  • Brainhack
  • Open Science SIG
  • Student/Postdoc SIG
  • Collaborators/Friends
  • PIs/Labmates
  • OHBM
  • Clouds